Persistent reproducible reporting by containerization of R Markdown documents.
liftr extends the R Markdown metadata format, helps you generate
Dockerfile for rendering documents in Docker containers. Users can also include and run pre-defined Rabix tools/workflows, then use Rabix output in their dockerized documents.
To download and install
liftr from CRAN:
Or, you can try the development version on GitHub:
To load the package in R, simply use
and you are all set. See the package vignette (can also be opened with
vignette("liftr-intro") in R) for a quick-start guide.
pandocto control Pandoc installation. Automatically set this to
bioconductor/...images. This solves issue #12.
drender(). They provide basic support for dockerizing R Markdown documents, with support for running Rabix workflows/tools before rendering R Markdown documents in Docker containers.