A Simple Data Management and Sharing Tool

An interface to store, retrieve, search, join and share datasets, based on Elasticsearch (ES) API. As a decentralized, FAIR and collaborative search engine and database effort, it proposes a simple push/pull/search mechanism only based on ES, a tool which can be deployed on nearly any hardware. It is a high-level R-ES binding to ease data usage using 'elastic' package (S. Chamberlain (2020)) < https://docs.ropensci.org/elastic/>, extends joins from 'dplyr' package (H. Wickham et al. (2020)) < https://dplyr.tidyverse.org/> and integrates specific biological format importation with Bioconductor packages such as 'rtracklayer' (M. Lawrence and al. (2009) ) < http://bioconductor.org/packages/rtracklayer>, 'Biostrings' (H. Pagès and al. (2020) ) < http://bioconductor.org/packages/Biostrings>, and 'Rsamtools' (M. Morgan and al. (2020) ) < http://bioconductor.org/packages/Rsamtools>, but also a long list of more common ones with 'rio' (C-h. Chan and al. (2018)) < https://cran.r-project.org/package=rio>.


Reference manual

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0.1.1 by Régis Ongaro-Carcy, 4 months ago


Report a bug at https://github.com/regisoc/kibior/issues

Browse source code at https://github.com/cran/kibior

Authors: Régis Ongaro-Carcy [aut, cre, ctb] , Arnaud Droit [fnd]

Documentation:   PDF Manual  

GPL-2 license

Imports R6, data.table, stringr, purrr, jsonlite, rio, tibble, dplyr, magrittr, tidyr, elastic, Biostrings, Rsamtools, rtracklayer

Suggests ggplot2, readr, xml2, yaml, testthat, rmarkdown, knitr

See at CRAN