Calling Copy Number Alterations in Amplicon Sequencing Data

Method for the calculation of copy numbers and calling of copy number alterations. The algorithm uses coverage data from amplicon sequencing of a sample cohort as input. The method includes significance assessment, correction for multiple testing and does not depend on normal DNA controls. Budczies (2016 Mar 15) .


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install.packages("ioncopy")

2.1.1 by Jan Budczies, a year ago


Browse source code at https://github.com/cran/ioncopy


Authors: Jan Budczies , Eva Romanovsky


Documentation:   PDF Manual  


GPL-3 license


Imports shiny


See at CRAN