Calling Copy Number Alterations in Amplicon Sequencing Data

Method for the calculation of copy numbers and calling of copy number alterations. The algorithm uses coverage data from amplicon sequencing of a sample cohort as input. The method includes significance assessment, correction for multiple testing and does not depend on normal DNA controls. Budczies (2016 Mar 15) .


Reference manual

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2.2.2 by Jan Budczies, a year ago

Browse source code at

Authors: Jan Budczies , Eva Romanovsky

Documentation:   PDF Manual  

GPL-3 license

Imports shiny, zip

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