Four-Step Biodiversity Analysis Based on 'iNEXT'

Expands 'iNEXT' to include the estimation of sample completeness and evenness. The package provides simple functions to perform the following four-step biodiversity analysis: STEP 1: Assessment of sample completeness profiles. STEP 2a: Analysis of size-based rarefaction and extrapolation sampling curves to determine whether the asymptotic diversity can be accurately estimated. STEP 2b: Comparison of the observed and the estimated asymptotic diversity profiles. STEP 3: Analysis of non-asymptotic coverage-based rarefaction and extrapolation sampling curves. STEP 4: Assessment of evenness profiles. The analyses in STEPs 2a, 2b and STEP 3 are mainly based on the previous 'iNEXT' package. Refer to the 'iNEXT' package for details. This package is mainly focusing on the computation for STEPs 1 and 4. See Chao et al. (2020) for statistical background.


Reference manual

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install.packages("iNEXT.4steps")

1.0.1 by Anne Chao, 2 years ago


https://sites.google.com/view/chao-lab-website/software/inext-4steps/


Report a bug at https://github.com/KaiHsiangHu/iNEXT.4steps/issues


Browse source code at https://github.com/cran/iNEXT.4steps


Authors: Anne Chao [aut, cre] , KaiHsiang Hu [ctb]


Documentation:   PDF Manual  


GPL (>= 3) license


Imports ggplot2, reshape2, dplyr, stats, ggpubr, purrr, iNEXT.3D

Suggests testthat, knitr, rmarkdown


See at CRAN