A Pipeline to Define Gene Families in Legumes and Beyond

A pipeline with high specificity and sensitivity in extracting proteins from the RefSeq database (National Center for Biotechnology Information). Manual identification of gene families is highly time-consuming and laborious, requiring an iterative process of manual and computational analysis to identify members of a given family. The pipelines implements an automatic approach for the identification of gene families based on the conserved domains that specifically define that family. See Die et al. (2018) for more information and examples.


Reference manual

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1.0.11 by Jose V. Die, a year ago


Report a bug at https://github.com/NCBI-Hackathons/GeneHummus/issues

Browse source code at https://github.com/cran/geneHummus

Authors: Jose V. Die [aut, cre] , Moamen M. Elmassry [ctb] , Kimberly H. LeBlanc [ctb] , Olaitan I. Awe [ctb] , Allissa Dillman [ctb] , Ben Busby [aut]

Documentation:   PDF Manual  

MIT + file LICENSE license

Imports rentrez, stringr, dplyr, httr, utils, curl

Suggests knitr, rmarkdown

See at CRAN