Drawing Gapped Cluster Heatmap with 'ggplot2'

The gap encodes the distance between clusters and improves interpretation of cluster heatmaps. The gaps can be of the same distance based on a height threshold to cut the dendrogram. Another option is to vary the size of gaps based on the distance between clusters.


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Reference manual

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install.packages("gapmap")

0.1.0 by Evan Biederstedt, 3 months ago


https://github.com/evanbiederstedt/gapmap


Report a bug at https://github.com/evanbiederstedt/gapmap/issues


Browse source code at https://github.com/cran/gapmap


Authors: Ryo Sakai [aut] , Evan Biederstedt [cre, aut]


Documentation:   PDF Manual  


GPL-2 | GPL-3 license


Imports grid

Depends on ggplot2, reshape2

Suggests knitr, dendsort, RColorBrewer, rmarkdown


Suggested by dendsort.


See at CRAN