Drawing Gapped Cluster Heatmaps with 'ggplot2'

The gap encodes the distance between clusters and improves interpretation of cluster heatmaps. The gaps can be of the same distance based on a height threshold to cut the dendrogram. Another option is to vary the size of gaps based on the distance between clusters.

gapmap

Functions for Drawing Gapped Cluster Heatmap with ggplot2

More information on this package can be found on CRAN here.

This is a forked repo from gapmap version 0.0.3, which was removed from CRAN in 2020. The original sourcecode by the author Ryo Sakai can be found on Bitbucket here.

I simply fixed the error, and re-submitted to CRAN.

Vignettes

• Simple example:
  • HTML version
  • Markdown version
• TCGA example:
  • HTML version
  • Markdown version