Foraminiferal Image Analysis and Test Measurement

The goal of this collection of functions is to provide an easy to use tool for the measurement of foraminifera and other unicellulars organisms size. With functions developed to guide foraminiferal test biovolume calculations and cell biomass estimations. The volume function includes several microalgae models geometric adaptations based on Hillebrand et al. (1999) , Sun and Liu (2003) and Vadrucci, Cabrini and Basset (2007) .


Reference manual

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0.1.0 by Thaise R Freitas, 9 months ago

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Authors: Thaise R Freitas [aut, cre] , Eduardo Bacalhau [aut] , Carla Bonetti [aut]

Documentation:   PDF Manual  

MIT + file LICENSE license

Imports dplyr, magrittr, tibble, reticulate

Suggests knitr, rmarkdown, data.table, xml2, raster, testthat

System requirements: Python >=3.5, numpy ( >= 1.18.1), imutils ( >= 0.5.3), scipy ( >= 1.4.1), pandas ( >= 1.0.2), Pillow ( >= 7.0.0), opencv ( >= 4.1.2)

See at CRAN