Cumulative Percent Decay Curve Generator

Calculates and visualises cumulative percent 'decay' curves, which are typically calculated from metagenomic taxonomic profiles. These can be used to estimate the level of expected 'endogenous' taxa at different abundance levels retrieved from metagenomic samples, when comparing to samples of known sampling site or source. Method described in Fellows Yates, J. A. et. al. (2021) Proceedings of the National Academy of Sciences USA .


Reference manual

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1.1.0 by James A. Fellows Yates, a month ago

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Authors: James A. Fellows Yates [aut, cre]

Documentation:   PDF Manual  

MIT + file LICENSE license

Imports dplyr, ggplot2, magrittr, readr, rlang, tidyr

Suggests knitr, rmarkdown, testthat, tibble

See at CRAN