Transform Counts in RNA-Seq Data Analysis

Provide data transformation functions to transform counts in RNA-seq data analysis. Please see the reference: Zhang Z, Yu D, Seo M, Hersh CP, Weiss ST, Qiu W. (2019) .


v0.0.5 created on Feb. 12, 2019 (1) fixed two bugs that were pointed out by CRAN: The Title field should be in title case. Current version is: 'Transform Counts in RNA-seq Data Analysis' In title case that is: 'Transform Counts in RNA-Seq Data Analysis'

The Description field contains CP, Weiss ST, Qiu W. (2018)

(2) change functions names: logansMat -> lTransformer logVTransMat -> lvTransformer log2TransMat -> l2Transformer logV2TransMat -> lv2Transformer rootTransMat -> rTransformer rootVTransMat -> rvTransformer root2TransMat -> r2Transformer rootV2TransMat -> rv2Transformer

(3) add a simulated dataset for example R code

Reference manual

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0.0.6 by Zeyu Zhang, 3 years ago

Browse source code at

Authors: Zeyu Zhang [aut, cre] , Danyang Yu [aut, ctb] , Minseok Seo [aut, ctb] , Craig P. Hersh [aut, ctb] , Scott T. Weiss [aut, ctb] , Weiliang Qiu [aut, ctb]

Documentation:   PDF Manual  

GPL (>= 2) license

Imports MASS, graphics, stats

Depends on Biobase, limma

See at CRAN