Transform Counts in RNA-Seq Data Analysis

Provide data transformation functions to transform counts in RNA-seq data analysis. Please see the reference: Zhang Z, Yu D, Seo M, Hersh CP, Weiss ST, Qiu W. (2019) .


News

v0.0.5 created on Feb. 12, 2019 (1) fixed two bugs that were pointed out by CRAN: The Title field should be in title case. Current version is: 'Transform Counts in RNA-seq Data Analysis' In title case that is: 'Transform Counts in RNA-Seq Data Analysis'

The Description field contains CP, Weiss ST, Qiu W. (2018) https://doi.org/10.1101/432690.

(2) change functions names: logansMat -> lTransformer logVTransMat -> lvTransformer log2TransMat -> l2Transformer logV2TransMat -> lv2Transformer rootTransMat -> rTransformer rootVTransMat -> rvTransformer root2TransMat -> r2Transformer rootV2TransMat -> rv2Transformer

(3) add a simulated dataset for example R code

Reference manual

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install.packages("countTransformers")

0.0.6 by Zeyu Zhang, 6 months ago


Browse source code at https://github.com/cran/countTransformers


Authors: Zeyu Zhang [aut, cre] , Danyang Yu [aut, ctb] , Minseok Seo [aut, ctb] , Craig P. Hersh [aut, ctb] , Scott T. Weiss [aut, ctb] , Weiliang Qiu [aut, ctb]


Documentation:   PDF Manual  


GPL (>= 2) license


Imports MASS, graphics, stats

Depends on Biobase, limma


See at CRAN