Removes the Cell-Cycle Effect from Single-Cell RNA-Sequencing Data

Implements a method for identifying and removing the cell-cycle effect from scRNA-Seq data. The description of the method is in Barron M. and Li J. (2016) . Identifying and removing the cell-cycle effect from single-cell RNA-Sequencing data. Submitted. Different from previous methods, ccRemover implements a mechanism that formally tests whether a component is cell-cycle related or not, and thus while it often thoroughly removes the cell-cycle effect, it preserves other features/signals of interest in the data.


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install.packages("ccRemover")

1.0.4 by Jun Li, 2 years ago


Browse source code at https://github.com/cran/ccRemover


Authors: Jun Li [aut, cre] , Martin Barron [aut]


Documentation:   PDF Manual  


GPL-3 license


Imports stats, utils

Suggests knitr, rmarkdown


See at CRAN