Calculate Ad Hoc Distance Thresholds for DNA Barcoding Identification

Two functions to calculate intra- and interspecific pairwise distances, evaluate DNA barcoding identification error and calculate an ad hoc distance threshold for each particular reference library of DNA barcodes. Specimen identification at this ad hoc distance threshold (using the best close match method) will produce identifications with an estimated relative error probability that can be fixed by the user (e.g. 5%).


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install.packages("adhoc")

1.1 by Gontran Sonet, 5 years ago


http://jemu.myspecies.info/computer-programs


Browse source code at https://github.com/cran/adhoc


Authors: Gontran Sonet


Documentation:   PDF Manual  


Task views: Phylogenetics, Especially Comparative Methods


GPL (>= 2) license


Depends on ape, pegas, polynom


See at CRAN