Similarity Regression

Similarity regression, evaluating the probability of association between sets of ontological terms and binary response vector. A no-association model is compared with one in which the log odds of a true response is linked to the semantic similarity between terms and a latent characteristic ontological profile - 'Phenotype Similarity Regression for Identifying the Genetic Determinants of Rare Diseases', Greene et al 2016 .


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Reference manual

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install.packages("SimReg")

3.3 by Daniel Greene, 2 months ago


Browse source code at https://github.com/cran/SimReg


Authors: Daniel Greene


Documentation:   PDF Manual  


GPL (>= 2) license


Imports Rcpp, ontologyIndex, ontologySimilarity, ontologyPlot

Suggests knitr, rmarkdown

Linking to Rcpp


See at CRAN