Subclone Multiplicity Allocation and Somatic Heterogeneity

Cluster user-supplied somatic read counts with corresponding allele-specific copy number and tumor purity to infer feasible underlying intra-tumor heterogeneity in terms of number of subclones, multiplicity, and allocation (Little et al. (2019) ).


Reference manual

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install.packages("SMASH")

1.0.0 by Paul Little, 2 years ago


Browse source code at https://github.com/cran/SMASH


Authors: Paul Little [aut, cre]


Documentation:   PDF Manual  


GPL (>= 3) license


Imports Rcpp, stats, smarter, reshape2, ggplot2

Suggests knitr, devtools

Linking to Rcpp, RcppArmadillo


See at CRAN