A Semi-Supervised Category Identification and Assignment Tool

An automatic cell type detection and assignment algorithm for single cell RNA-Seq and Cytof/FACS data. 'SCINA' is capable of assigning cell type identities to a pool of cells profiled by scRNA-Seq or Cytof/FACS data with prior knowledge of markers, such as genes and protein symbols that are highly or lowly expressed in each category.



  • Experimental version

Reference manual

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1.1.0 by Ze Zhang, 2 months ago

http://lce.biohpc.swmed.edu/scina/ https://github.com/jcao89757/SCINA

Browse source code at https://github.com/cran/SCINA

Authors: Ze Zhang

Documentation:   PDF Manual  

GPL-2 license

Depends on MASS, gplots

See at CRAN