EWAS using Reference-Free DNA Methylation Mixture Deconvolution

Reference-free method for conducting EWAS while deconvoluting DNA methylation arising as mixtures of cell types. The older method (Houseman et al., 2014,) is similar to surrogate variable analysis (SVA and ISVA), except that it makes additional use of a biological mixture assumption. The newer method (Houseman et al., 2016, ) is similar to non-negative matrix factorization, with additional constraints and additional utilities.


Reference manual

It appears you don't have a PDF plugin for this browser. You can click here to download the reference manual.


2.2 by E. Andres Houseman, 3 years ago

Browse source code at https://github.com/cran/RefFreeEWAS

Authors: E. Andres Houseman , Sc.D.

Documentation:   PDF Manual  

GPL (>= 2) license

Depends on quadprog

See at CRAN