Rduckhts

'DuckDB' High Throughput Sequencing File Formats Reader Extension

Bundles the 'duckhts' 'DuckDB' extension for reading High Throughput Sequencing file formats with 'DuckDB'. The 'DuckDB' C extension API < https://duckdb.org/docs/stable/clients/c/api> and its 'htslib' dependency are compiled from vendored sources during package installation. James K Bonfield and co-authors (2021) . VariantKey / RegionKey support follows Nicola Asuni (2018) .

Reference manual

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install.packages("Rduckhts")

1.5.2-0.1.5 by Sounkou Mahamane Toure, a month ago

https://github.com/RGenomicsETL/duckhts, https://rgenomicsetl.r-universe.dev/Rduckhts

Report a bug at https://github.com/RGenomicsETL/duckhts/issues

Browse source code at https://github.com/cran/Rduckhts

Authors: Sounkou Mahamane Toure [aut, cre] , James K Bonfield , John Marshall , Petr Danecek , Heng Li , Valeriu Ohan , Andrew Whitwham , Thomas Keane , Robert M Davies [ctb] (Htslib Authors) , Brent Pedersen [cph] (Original author of mosdepth and Somalier) , Giulio Genovese [cph] (Author of BCFTools munge , score , liftover plugins) , Nicola Asuni [cph] (Author of the VariantKey and RegionKey C API) , Devon Ryan [cph] (Author of libBigWig) , DuckDB C Extension API Authors [ctb]

Documentation:   PDF Manual  

GPL-3 license

Imports DBI, duckdb, methods, utils

Suggests Rtinycc, tinytest

System requirements: GNU make, cmake, zlib, libbz2, liblzma, libcurl, openssl (development headers)

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