HMM-Based Model for Genotyping and Cross-Over Identification

Our method integrates information from all sequenced samples, thus avoiding loss of alleles due to low coverage. Moreover, it increases the statistical power to uncover sequencing or alignment errors.


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install.packages("RTIGER")

0.99.0 by Rafael Campos-Martin, 21 days ago


Browse source code at https://github.com/cran/RTIGER


Authors: Rafael Campos-Martin [cre] , Sophia Schmickler [aut] , Manish Goel [ctb] , Korbinian Schneeberger [aut] , Achim Tresch [aut]


Documentation:   PDF Manual  


GPL (>= 2) license


Imports methods, e1071, reshape2, ggplot2, TailRank, JuliaCall, IRanges, qpdf, grDevices, graphics, stats, utils

Depends on GenomicRanges, GenomeInfoDb

Suggests knitr, rmarkdown, markdown, Gviz, rtracklayer


See at CRAN