HMM-Based Model for Genotyping and Cross-Over Identification

Our method integrates information from all sequenced samples, thus avoiding loss of alleles due to low coverage. Moreover, it increases the statistical power to uncover sequencing or alignment errors.


Reference manual

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0.99.0 by Rafael Campos-Martin, 6 months ago

Browse source code at

Authors: Rafael Campos-Martin [cre] , Sophia Schmickler [aut] , Manish Goel [ctb] , Korbinian Schneeberger [aut] , Achim Tresch [aut]

Documentation:   PDF Manual  

GPL (>= 2) license

Imports methods, e1071, reshape2, ggplot2, TailRank, JuliaCall, IRanges, qpdf, grDevices, graphics, stats, utils

Depends on GenomicRanges, GenomeInfoDb

Suggests knitr, rmarkdown, markdown, Gviz, rtracklayer

See at CRAN