Random Effects for the Identification of Differential Splicing

Contains the REIDS model presented in Van Moerbeke et al (2017) for the detection of alternative splicing. The method is extended by incorporating junction information for the assessment of alternative splicing. The vignette introduces the model and shows an example work flow.


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Reference manual

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install.packages("REIDS")

0.1.0 by Marijke Van Moerbeke, 9 months ago


Browse source code at https://github.com/cran/REIDS


Authors: Marijke Van Moerbeke


Documentation:   PDF Manual  


GPL-3 license


Imports data.table, RColorBrewer, MCMCpack, lmtest, methods

Depends on aroma.affymetrix, aroma.core, GenomeGraphs, biomaRt


See at CRAN