Features Extracted from Position Specific Scoring Matrix (PSSM)

Returns almost all features that has been extracted from Position Specific Scoring Matrix (PSSM) so far, which is a matrix of L rows (L is protein length) and 20 columns produced by 'PSI-BLAST' which is a program to produce PSSM Matrix from multiple sequence alignment of proteins see < https://www.ncbi.nlm.nih.gov/books/NBK2590/> for mor details. some of these features are described in Zahiri, J., et al.(2013) , Saini, H., et al.(2016) , Ding, S., et al.(2014) , Cheng, C.W., et al.(2008) , Juan, E.Y., et al.(2009) .


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install.packages("PSSMCOOL")

0.2.2 by Alireza mohammadi, 21 days ago


https://github.com/BioCool-Lab/PSSMCOOL


Report a bug at https://github.com/BioCool-Lab/PSSMCOOL/issues


Browse source code at https://github.com/cran/PSSMCOOL


Authors: Javad zahiri [aut] , Alireza mohammadi [aut, cre] , Saber mohammadi [aut]


Documentation:   PDF Manual  


GPL-3 license


Imports utils, gtools, infotheo, phonTools, dtt

Suggests testthat, spelling, waveslim, knitr, rmarkdown


See at CRAN