A Modified Fisher’s Method to Test Overall Gene-Level Effect

The separate p-values of SNPs, RNA expressions and DNA methylations are calculated by KM regression. The correlation between different omics data are taken into account. This method can be applied to either samples with all three types of omics data or samples with two types.


Reference manual

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1.0 by Qi Yan, 2 years ago

Browse source code at https://github.com/cran/OmnibusFisher

Authors: Qi Yan

Documentation:   PDF Manual  

GPL (>= 2) license

Imports survey

Depends on CompQuadForm, stringr

See at CRAN