Next Generation Clustered Heat Maps

Next-Generation Clustered Heat Maps (NG-CHMs) allow for dynamic exploration of heat map data in a web browser. 'NGCHM' allows users to create both stand-alone HTML files containing a Next-Generation Clustered Heat Map, and .ngchm files to view in the NG-CHM viewer. See Ryan MC, Stucky M, et al (2020) for more details.


NGCHMR

An R package for creating Next-Generation Clustered Heat Maps (NG-CHM).

Please see the website for this R package, https://md-anderson-bioinformatics.github.io/NGCHM-R/, for

  • Installation Instructions
  • Tutorials (Vignettes)
  • Function Reference
  • YouTube Video Links

Reference manual

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install.packages("NGCHM")

1.0.4 by Mary A Rohrdanz, 2 years ago


https://md-anderson-bioinformatics.github.io/NGCHM-R/, https://github.com/MD-Anderson-Bioinformatics/NGCHM-R


Browse source code at https://github.com/cran/NGCHM


Authors: Bradley M Broom [aut] , Mary A Rohrdanz [ctb, cre] , Chris Wakefield [ctb] , James M Melott [ctb] , MD Anderson Cancer Center [cph]


Documentation:   PDF Manual  


GPL-3 license


Imports digest, grDevices, htmltools, httr, jsonlite, logger, methods, stats, tsvio, utils

Suggests knitr, rmarkdown, Rtsne, testthat, umap, uwot

Enhances NGCHMDemoData, NGCHMSupportFiles

System requirements: Java (>= 11) Git


See at CRAN