Network Enrichment Analysis

Performs network enrichment analysis against functional gene sets. Benchmarks networks. Renders raw gene profile matrices of dimensionality "N genes x N samples" into the space of gene set (typically pathway) enrichment scores of dimensionality "N pathways x N samples".


Reference manual

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1.5 by Ashwini Jeggari, a year ago

Browse source code at

Authors: Andrey Alexeyenko [aut, cph, ths] , Ashwini Jeggari [aut, cre]

Documentation:   PDF Manual  

GPL-3 license

Imports stats, utils, ROCR, graphics, parallel, hexbin, MASS, RColorBrewer

Suggests knitr, rmarkdown, tinytex, data.table

See at CRAN