Network Enrichment Analysis

Performs network enrichment analysis against functional gene sets. Benchmarks networks. Renders raw gene profile matrices of dimensionality 'Ngenes x Nsamples' into the space of gene set (typically pathway) enrichment scores of dimensionality 'Npathways x Nsamples'.


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install.packages("NEArender")

1.4 by Ashwini Jeggari, 10 months ago


Browse source code at https://github.com/cran/NEArender


Authors: Andrey Alexeyenko [aut, cph, ths], Ashwini Jeggari [aut, cre]


Documentation:   PDF Manual  


GPL-3 license


Imports parallel, RColorBrewer, ROCR, stats, MASS

Suggests knitr, rmarkdown, data.table


See at CRAN