Network Enrichment Analysis

Performs network enrichment analysis against functional gene sets. Benchmarks networks. Renders raw gene profile matrices of dimensionality 'Ngenes x Nsamples' into the space of gene set (typically pathway) enrichment scores of dimensionality 'Npathways x Nsamples'.


Reference manual

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1.4 by Ashwini Jeggari, 2 years ago

Browse source code at

Authors: Andrey Alexeyenko [aut, cph, ths], Ashwini Jeggari [aut, cre]

Documentation:   PDF Manual  

GPL-3 license

Imports parallel, RColorBrewer, ROCR, stats, MASS

Suggests knitr, rmarkdown, data.table

See at CRAN