Microbial Niche Measurements

Measures niche breadth and overlap of microbial taxa from large matrices. Niche breadth measurements include Levins' niche breadth (Bn) index, Hurlbert's Bn and Feinsinger's proportional similarity (PS) index. (Feinsinger, P., Spears, E.E., Poole, R.W. (1981) ). Niche overlap measurements include Levin's Overlap (Ludwig, J.A. and Reynolds, J.F. (1988, ISBN:0471832359)) and a Jaccard similarity index of Feinsinger's PS values between taxa pairs, as Proportional Overlap.


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install.packages("MicroNiche")

1.0.0 by Damien Finn, 5 months ago


Browse source code at https://github.com/cran/MicroNiche


Authors: Damien Finn [aut, cre]


Documentation:   PDF Manual  


GPL-2 license


Depends on ggplot2, reshape2, stats


See at CRAN