Graphical Display of Pairwise Linkage Disequilibria Between SNPs

Produces a graphical display, as a heat map, of measures of pairwise linkage disequilibria between SNPs. Users may optionally include the physical locations or genetic map distances of each SNP on the plot. Users should note that the imported package 'snpStats' and the suggested packages 'rtracklayer', 'GenomicRanges', 'GenomInfoDb' and 'IRanges' are all BioConductor packages <>.


Reference manual

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0.99-7 by Brad McNeney, 2 months ago

Browse source code at

Authors: Ji-Hyung Shin [aut] , Sigal Blay [aut] , Nicholas Lewin-Koh [ctb] , Brad McNeney [aut, cre] , Gloria Yang [ctb] , Matthew Reyers [ctb] , Youwei Yan [ctb] , Jinko Graham [aut]

Documentation:   PDF Manual  

Task views: Statistical Genetics

GPL-3 license

Imports grid, genetics, snpStats, Rcpp

Suggests rtracklayer, GenomicRanges, GenomeInfoDb, IRanges, lattice, ggplot2, vcfR

Linking to Rcpp

Imported by synbreed.

See at CRAN