Graphical Display of Pairwise Linkage Disequilibria Between SNPs

Produces a graphical display, as a heat map, of measures of pairwise linkage disequilibria between SNPs. Users may optionally include the physical locations or genetic map distances of each SNP on the plot. Users should note that the imported package 'snpStats' and the suggested packages 'rtracklayer', 'GenomicRanges', 'GenomInfoDb' and 'IRanges' are all BioConductor packages < https://bioconductor.org>.


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install.packages("LDheatmap")

0.99-7 by Brad McNeney, 5 months ago


https://sfustatgen.github.io/LDheatmap/


Browse source code at https://github.com/cran/LDheatmap


Authors: Ji-Hyung Shin [aut] , Sigal Blay [aut] , Nicholas Lewin-Koh [ctb] , Brad McNeney [aut, cre] , Gloria Yang [ctb] , Matthew Reyers [ctb] , Youwei Yan [ctb] , Jinko Graham [aut]


Documentation:   PDF Manual  


Task views: Statistical Genetics


GPL-3 license


Imports grid, genetics, snpStats, Rcpp

Suggests rtracklayer, GenomicRanges, GenomeInfoDb, IRanges, lattice, ggplot2, vcfR

Linking to Rcpp


Imported by synbreed.


See at CRAN