Smooth L0 Penalty Approximations for Gaussian Graphical Models

Provides smooth approximations to the L0 norm penalty for estimating sparse Gaussian graphical models (GGMs). Network estimation is performed using the Local Linear Approximation (LLA) framework (Fan & Li, 2001 ; Zou & Li, 2008 ) with five penalty functions: arctangent (Wang & Zhu, 2016 ), EXP (Wang, Fan, & Zhu, 2018 ), Gumbel, Log (Candes, Wakin, & Boyd, 2008 ), and Weibull. Adaptive penalty parameters for EXP, Gumbel, and Weibull are estimated via maximum likelihood, and model selection uses information criteria including AIC, BIC, and EBIC (Extended BIC). Simulation functions generate multivariate normal data from GGMs with stochastic block model or small-world (Watts-Strogatz) network structures.


Reference manual

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install.packages("L0ggm")

0.1.2 by Alexander Christensen, a month ago


Report a bug at https://github.com/AlexChristensen/L0ggm/issues


Browse source code at https://github.com/cran/L0ggm


Authors: Alexander Christensen [aut, cre] (ORCID: , Jeongwon Choi [ctb] , John Fox [cph, ctb] (Original implementation of polyserial correlations in auto_correlate.R) , Yves Rosseel [cph, ctb] (Original implementation of rmsea_ci in network_fit.R) , Alan Genz [cph, ctb] (Fortran implementation of the bivariate normal CDF (TVPACK MVBVU) in polychoric_matrix.c , translated via the pbivnorm R package) , David Blackman [ctb] (Original xoshiro.c implementation) , Sebastiano Vigna [ctb] (Original xoshiro.c implementation) , John Burkardt [cph, ctb] (Original ziggurat.c implementation)


Documentation:   PDF Manual  


AGPL (>= 3.0) license


Imports igraph, glasso, glassoFast, Matrix, methods, psych, stats


See at CRAN