Implements Under/Oversampling for Probability Estimation

Implements under/oversampling for probability estimation. To be used with machine learning methods such as AdaBoost, random forests, etc.


The JOUSBoost package implements under/oversampling with jittering for probability estimation. Its intent is to be used to improve probability estimates that come from boosting algorithms (such as AdaBoost), but is modular enough to be used with virtually any classification algorithm from machine learning. See Mease (2007) for more information.

You can install:

  • the latest released version from CRAN with
install.packages("JOUSBoost")
  • the latest development version from github with
devtools::install_github("molson2/JOUSBoost")

Illustration

The following example gives a useage case for JOUSBoost. This example illustrates the improvement in probability estimates on gets from applying the JOUS procedure to AdaBoost on a simulated data set. First, we'll train AdaBoost applied to depth three decision trees, and then we'll get the estimated probabilities.

library(JOUSBoost)
set.seed(111)
dat = friedman_data(n = 1000, gamma = 0.5)
train_index = sample(1:1000, 800)
 
# Train AdaBoost classifier using depth 3 decision tree
ada = adaboost(dat$X[train_index,], dat$y[train_index], tree_depth = 3, n_rounds = 400)
 
# get probability estimate on test data
phat_ada = predict(ada, dat$X[-train_index, ], type="prob")

Next, we'll compute probabilities by using the JOUS procedure.

# Apply jous to adaboost classifier
class_func = function(X, y) adaboost(X, y, tree_depth = 3, n_rounds = 400)
pred_func = function(fit_obj, X_test) predict(fit_obj, X_test)
 
jous_fit = jous(dat$X[train_index,], dat$y[train_index], class_func,
                pred_func, type="under", delta=10, keep_models=TRUE)
 
# get probability estimate on test data
phat_jous = predict(jous_fit, dat$X[-train_index, ], type="prob")

Finally, we can see the benefit of using JOUSBoost!

# compare MSE of probability estimates
p_true = dat$p[-train_index]
mean((p_true - phat_jous)^2)
#> [1] 0.05455999
mean((p_true - phat_ada)^2)
#> [1] 0.1277416

Mease, D., Wyner, A., and Buja, A. 2007. “Costweighted Boosting with Jittering and over/under-Sampling. JOUS-Boost.” Journal of Machine Learning Research 8 409-439.

News

Reference manual

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install.packages("JOUSBoost")

2.1.0 by Matthew Olson, 2 years ago


Browse source code at https://github.com/cran/JOUSBoost


Authors: Matthew Olson [aut, cre]


Documentation:   PDF Manual  


MIT + file LICENSE license


Imports Rcpp, rpart, stats, doParallel, foreach

Suggests testthat, knitr, rmarkdown

Linking to Rcpp


See at CRAN