Macroevolutionary phylogentic analysis of species trees and gene trees

A Bay Area high level phylogenetic analysis package mostly using the birth-death process. Analysis of species tree branching times and simulation of species trees under a number of different time variable birth-death processes. Analysis of gene tree species tree reconciliations and simulations of gene trees in species trees.


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install.packages("HyPhy")

1.0 by Nathaniel Malachi Hallinan, 7 years ago


Browse source code at https://github.com/cran/HyPhy


Authors: Nathaniel Malachi Hallinan


Documentation:   PDF Manual  


Task views: Phylogenetics, Especially Comparative Methods


GPL-2 license


Depends on ape, R.utils


See at CRAN