Macroevolutionary phylogentic analysis of species trees and gene trees

A Bay Area high level phylogenetic analysis package mostly using the birth-death process. Analysis of species tree branching times and simulation of species trees under a number of different time variable birth-death processes. Analysis of gene tree species tree reconciliations and simulations of gene trees in species trees.


Reference manual

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1.0 by Nathaniel Malachi Hallinan, 9 years ago

Browse source code at

Authors: Nathaniel Malachi Hallinan

Documentation:   PDF Manual  

Task views: Phylogenetics, Especially Comparative Methods

GPL-2 license

Depends on ape, R.utils

See at CRAN