Processing various types of data on GEO and TCGA

Gene Expression Omnibus(GEO) and The Cancer Genome Atlas (TCGA) provide us with a wealth of data, such as RNA-seq, DNA Methylation, and Copy number variation data. It's easy to download data from TCGA using the gdc tool, but processing these data into a format suitable for bioinformatics analysis requires more work. This R package was developed to handle these data.


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install.packages("GeoTcgaData")

0.2.0 by Erqiang Hu, 3 months ago


Browse source code at https://github.com/cran/GeoTcgaData


Authors: Erqiang Hu [aut, cre]


Documentation:   PDF Manual  


Artistic-2.0 license


Imports utils, data.table

Suggests knitr, rmarkdown, DESeq2, S4Vectors


See at CRAN