Processing various types of data on GEO and TCGA

Gene Expression Omnibus(GEO) and The Cancer Genome Atlas (TCGA) provide us with a wealth of data, such as RNA-seq, DNA Methylation, and Copy number variation data. It's easy to download data from TCGA using the gdc tool, but processing these data into a format suitable for bioinformatics analysis requires more work. This R package was developed to handle these data.


Reference manual

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0.2.4 by Erqiang Hu, 9 months ago

Browse source code at

Authors: Erqiang Hu [aut, cre]

Documentation:   PDF Manual  

Artistic-2.0 license

Imports utils, data.table

Suggests knitr, rmarkdown, DESeq2, S4Vectors

See at CRAN