Dynamic Models in Epidemiology

Mathematical models of infectious diseases in humans and animals. Both, deterministic and stochastic models can be simulated and plotted.

Currently, the R package EpiDynamics implements the computer programs written in other programming languages and available in the web page of the book referenced below:

Keeling, M.J. and Rohani, P. (2007) Modeling Infectious Diseases in Humans and Animals. Princeton University Press.

The EpiDynamics' functions corresponding to the programs of the book are based on the Python versions written by Ilias Soumpasis.


EpiDynamics 0.3.0

  • Imports: for grid package, just used function are imported instead of the all package.

  • SIR: Corrected value for argument R in the example.

EpiDynamics 0.2

  • SIRAdditiveNoise:

  • SIRDemogStoch: updated name for SIRDemoStochastic function.

  • SIRTauLeap:

  • SISDemogStoch:

  • Plots of results added to the exmaples section in functions' documentation.

EpiDynamics 0.1.2

  • DESCRIPTION: imports update.

  • SIRScaledAdditiveNoise: Solves a SIR model with scaled additive noise.

  • SIRDemoStochastic: Solves a SIR model with demographic stochasticity.

  • SIR2TypesImports: Solves a model with two types of stochastic imports.

  • SIR2Stages: it is now called SIR2AgeClasses.

EpiDynamics 0.1.1

  • DESCRIPTION: imports update.

  • PlotModels: renamed as PlotMods to avoid conflicts with PlotModels function from the capm package. In addition, bug fixed to use correctly the 'variables' argument in the intended way.

EpiDynamics 0.1

  • DESCRIPTION: imports update.

EpiDynamics 0.0.3

  • SIR2AgeClasses: Previuosly named SIR2Stages.

  • PlotModels: Bug fix for grid argument.

EpiDynamics 0.0.2

  • PlotModels: It plots model's results.

  • SIRSinusoidalForcing: Now it solves bifurcation.

  • SIRSinusoidalBitrh: Bug fix to solve bifurcations.

EpiDynamics 0.0.1

  • Dynamic Models in Epidemiology

Reference manual

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0.3.1 by Oswaldo Santos Baquero, a year ago


Browse source code at https://github.com/cran/EpiDynamics

Authors: Oswaldo Santos Baquero [aut, cre] , Fernando Silveira Marques [aut]

Documentation:   PDF Manual  

GPL (>= 2) license

Imports deSolve, reshape2, ggplot2, grid

See at CRAN