Network Reconstruction and Changepoint Detection

Package EDISON (Estimation of Directed Interactions from Sequences Of Non-homogeneous gene expression) runs an MCMC simulation to reconstruct networks from time series data, using a non-homogeneous, time-varying dynamic Bayesian network. Networks segments and changepoints are inferred concurrently, and information sharing priors provide a reduction of the inference uncertainty.


News

RELEASE HISTORY OF THE "EDISON" PACKAGE

Version 1.1.1

  • Fixed incorrect log transformation in dinvgamma function.

Version 1.1

  • Fixed double counting bug in Poisson prior.
  • Implemented option to fix specified edges in the network.

Version 1.0

  • Initial Release

Reference manual

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install.packages("EDISON")

1.1.1 by Frank Dondelinger, 3 years ago


Browse source code at https://github.com/cran/EDISON


Authors: Frank Dondelinger , Sophie Lebre


Documentation:   PDF Manual  


GPL-2 license


Depends on corpcor, MASS

Suggests testthat


Imported by bgsmtr.


See at CRAN