Bridging and Extending the CytobankAPI Package in R to the Cytobank Web Application

A collection of tools that leverage the CytobankAPI R package < https://cran.r-project.org/web/packages/CytobankAPI/vignettes/cytobank-quickstart.html> to complete more complex workflows, and add/extend various Cytobank features.



Overview

The CytobankBridgeR package contains various tools to interact with Cytobank in R. This includes scripts, algorithms, etc.

Installation

First, generate a personal access token (PAT). Check the box for repo to enable downloading private repos you have access to in R.

# install.packages("devtools")
devtools::install_github("cytobank/CytobankR", auth_token="YOUR_PERSONAL_ACCESS_TOKEN_HERE")

News

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CytobankBridgeR 1.0.0

  • R scripts added:
    • gates.apply_cluster_gates: Apply cluster gates based off of cluster IDs
      • Allows for multicluster gate options
    • spade.bubble_spade_nodes: Automatically bubble each SPADE node based off a given prefix

Reference manual

It appears you don't have a PDF plugin for this browser. You can click here to download the reference manual.

install.packages("CytobankBridgeR")

1.0.0 by Preston Ng, a year ago


Browse source code at https://github.com/cran/CytobankBridgeR


Authors: Preston Ng [aut, cre] , Katherine Drake [aut] , Chris Ciccolella [aut]


Documentation:   PDF Manual  


Artistic-2.0 license


Depends on CytobankAPI, stats

Suggests rmarkdown


See at CRAN