News

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CytobankAPI 1.3.0

• Adding new FlowSOM Advanced Analyses endpoints
  • Includes documentation within vignettes, refer to https://developer.cytobank.org/

CytobankAPI 1.2.0

• EXPERIMENTS endpoints changes:
  • experiments.clone_selective allows more customizability in selective cloning options

CytobankAPI 1.1.1

• DROP endpoint removed:

  • drop.upload_zip

• Advanced Analyses:

  • viSNE: add advanced settings
    • seed, iterations, perplexity, and theta

• Bug fixes:

  • Allow advanced analyses updates to have empty channels

CytobankAPI 1.1.0

• DROP endpoints added:

  • drop.upload & drop.upload_zip allow users to upload DROP files (CSV, TSV, TXT, FCS) to Cytobank

• Statistics endpoint changes:

  • Allow long channel names to be used instead of channel IDs via the statistics.general endpoint
  • Get experiment version for user
  • Fixed bug involving experiments with no gates (was not able to gather statistics because no populations present in API response)
    • Now experiments with no gates are correctly gathering statistics

• Advanced Analyses:

  • Allow long channel names to be used for advanced analyses objects

CytobankAPI 1.0.1.1

• Bug fixes:

  • spade.bubbles_set endpoint correctly sending API requests using named named bubble list of node vectors

• SPADE endpoint changes:

  • Allow 'absolute number' settings for Downsampled Events Target
  • Exposing 'created experiment' for SPADE analyses

• Helper functions:

  • Added helper.channel_ids_from_long_names
    • Allow short channel names to be used instead of IDs

• Implementing startup message to view CytobankAPI NEWS (via the 'CytobankAPI_news()' function)

CytobankAPI 1.0.1

• Added a NEWS.md file to track changes to the package.

• SPADE endpoint changes:

  • Added downloading GML support
  • Added downloading full SPADE analysis support
  • Support updating the SPADE name directly via the spade.update method

• viSNE endpoint changes:

  • Added viSNE 2.0 settings

• Updated general documentation

Reference manual