Process CBASS-Derived PAM Data

Tools to process CBASS-derived PAM data efficiently. Minimal requirements are PAM-based photosynthetic efficiency data (or data from any other continuous variable that changes with temperature, e.g. relative bleaching scores) from 4 coral samples (nubbins) subjected to 4 temperature profiles of at least 2 colonies from 1 coral species from 1 site. Please refer to the following CBASS (Coral Bleaching Automated Stress System) papers for in-depth information regarding CBASS acute thermal stress assays, experimental design considerations, and ED5/ED50/ED95 thermal parameters: Nicolas R. Evensen et al. (2023) Christian R. Voolstra et al. (2020) Christian R. Voolstra et al. (2025) .


Reference manual

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install.packages("CBASSED50")

0.2.0 by Luigi Colin, a year ago


Browse source code at https://github.com/cran/CBASSED50


Authors: Yulia Iakovleva [aut] , Luigi Colin [aut, cre] , Christian Robert Voolstra [aut] (ORCID:


Documentation:   PDF Manual  


MIT + file LICENSE license


Imports drc, rlog, stats, utils, dplyr, ggplot2, readxl, glue

Suggests testthat


See at CRAN