Bayesian Calculation of Region-Specific Fixation Index to Detect Local Adaptation

An R implementation of an extension of the 'BayeScan' software (Foll, 2008) for codominant markers, adding the option to group individual SNPs into pre-defined blocks. A typical application of this new approach is the identification of genomic regions, genes, or gene sets containing one or more SNPs that evolved under directional selection.


BlockFeST

BlockFeST: Bayesian calculation of region-specific FST to detect local adaptation https://cran.r-project.org/web/packages/BlockFeST/index.html

Reference manual

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install.packages("BlockFeST")

2.0 by Bastian Pfeifer, 6 years ago


Browse source code at https://github.com/cran/BlockFeST


Authors: Bastian Pfeifer


Documentation:   PDF Manual  


GPL-2 license


Imports methods

Depends on BASIX

Suggests PopGenome


See at CRAN