Uncertainty Analysis for Species Distribution Models

This is a framework that aims to provide methods and tools for assessing the impact of different sources of uncertainties (e.g.positional uncertainty) on performance of species distribution models (SDMs).)


usdm

Uncertainty Analysis for Species Distribution Modelling

The usdm package provides a set of functions to support dealing with problematic situations in species distribution modelling (e.g., multicollinearity, positional uncertainty).

To detect whether predictor variables are subjected to multicollinearity, you may use vif (variance inflation factor) metric, and some methods implemeted in this package including vifstep or vifcor (a stepwise procedure to identify collinear variables).

To detect whether positional uncertainty in species data may affect SDMs, different strategies are implemented through using either global or local spatial autocorrelation. You may check the following links for more information:

https://r-gis.net/?q=positional_uncertainty (using global spatial autocorrelation)

https://r-gis.net/?q=positional_uncertainty2 (using local spatial autocorrelation)

To develop species distribution models (SDMs), you may use the sdm package.

Reference manual

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install.packages("usdm")

2.1-7 by Babak Naimi, 3 years ago


https://r-gis.net/


Browse source code at https://github.com/cran/usdm


Authors: Babak Naimi


Documentation:   PDF Manual  


GPL (>= 3) license


Imports raster

Depends on methods, terra


Imported by envar, regrrr.

Suggested by ENMeval, KnowBR, caretSDM.


See at CRAN