Detecting Differentially Expressed Genes in Time Course RNA-Seq Data

Uses a negative binomial mixed-effects (NBME) model to detect nonparallel differential expression(NPDE) genes and parallel differential expression(PDE) genes in the time course RNA-seq data.


Reference manual

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1.0.3 by Fan Gao, 8 months ago

Browse source code at

Authors: Fan Gao, Xiaoxiao Sun

Documentation:   PDF Manual  

GPL (>= 2) license

Imports gss, lattice, pheatmap, reshape, grDevices, graphics

Suggests rmarkdown, knitr

See at CRAN