Detecting Differentially Expressed Genes in Time Course RNA-Seq Data

Uses a negative binomial mixed-effects (NBME) model to detect nonparallel differential expression(NPDE) genes and parallel differential expression(PDE) genes in the time course RNA-seq data.


News

Reference manual

It appears you don't have a PDF plugin for this browser. You can click here to download the reference manual.

install.packages("timeSeq")

1.0.2 by Fan Gao, 5 months ago


Browse source code at https://github.com/cran/timeSeq


Authors: Fan Gao, Xiaoxiao Sun


Documentation:   PDF Manual  


GPL (>= 2) license


Imports parallel, gss, lattice, pheatmap, doParallel, foreach, reshape, grDevices, graphics

Suggests rmarkdown, knitr


See at CRAN