sybilcycleFreeFlux

Cycle-Free Flux Balance Analysis

Implement cycle-Free flux balance analysis, flux variability, and Random Sampling of solution space. Flux balance analysis is a technique to find fluxes in metabolic models at steady state. It is described in Orth, J.D., Thiele, I. and Palsson, B.O. What is flux balance analysis? Nat. Biotech. 28, 245-248 (2010).

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sybilcycleFreeFlux Version History

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Version 2.0.0 2016-05-30

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  • compatible with new sybil
  • cfFVA get all solutions (bound and cut)

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Version 1.0.2 2015-04-04

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  • cfFBA considers objective coefficients other than 1.

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Version 1.0.1 2014-08-06

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Reference manual

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install.packages("sybilcycleFreeFlux")

2.0.0 by Abdelmoneim Amer Desouki, 3 years ago

Browse source code at https://github.com/cran/sybilcycleFreeFlux

Authors: Abdelmoneim Amer Desouki [aut, cre]

Documentation:   PDF Manual  

GPL-3 license

Imports methods

Depends on sybil, Matrix, MASS

Suggests cplexAPI, glpkAPI

See at CRAN

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