Cycle-Free Flux Balance Analysis

Implement cycle-Free flux balance analysis, flux variability, and Random Sampling of solution space. Flux balance analysis is a technique to find fluxes in metabolic models at steady state. It is described in Orth, J.D., Thiele, I. and Palsson, B.O. What is flux balance analysis? Nat. Biotech. 28, 245-248 (2010).


News

sybilcycleFreeFlux Version History

-------------------------------------------------------

Version 2.0.0 2016-05-30

-------------------------------------------------------

  • compatible with new sybil
  • cfFVA get all solutions (bound and cut)

-------------------------------------------------------

Version 1.0.2 2015-04-04

-------------------------------------------------------

  • cfFBA considers objective coefficients other than 1.

-------------------------------------------------------

Version 1.0.1 2014-08-06

-------------------------------------------------------

Reference manual

It appears you don't have a PDF plugin for this browser. You can click here to download the reference manual.

install.packages("sybilcycleFreeFlux")

2.0.0 by Abdelmoneim Amer Desouki, 3 years ago


Browse source code at https://github.com/cran/sybilcycleFreeFlux


Authors: Abdelmoneim Amer Desouki [aut, cre]


Documentation:   PDF Manual  


GPL-3 license


Imports methods

Depends on sybil, Matrix, MASS

Suggests cplexAPI, glpkAPI


See at CRAN