Fast Implementation of Reading/Dump for .hic Files

API for fast data extraction for .hic files that provides programmatic access to the matrices. It doesn't store the pointer data for all the matrices, only the one queried, and currently we are only supporting matrices (not vectors).


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install.packages("strawr")

0.0.9 by Neva Cherniavsky Durand, 14 days ago


https://github.com/aidenlab/straw/tree/master/R


Browse source code at https://github.com/cran/strawr


Authors: Neva Cherniavsky Durand [aut, cre] , Muhammad Saad Shamim [aut] , Aiden Lab [cph]


Documentation:   PDF Manual  


MIT + file LICENSE license


Imports Rcpp

Linking to Rcpp

System requirements: libcurl: libcurl-devel (rpm) or libcurl4-openssl-dev (deb)


See at CRAN