Fast Implementation of Reading/Dump for .hic Files

API for fast data extraction for .hic files that provides programmatic access to the matrices. It doesn't store the pointer data for all the matrices, only the one queried, and currently we are only supporting matrices (not vectors).


Reference manual

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0.0.9 by Neva Cherniavsky Durand, 5 months ago

Browse source code at

Authors: Neva Cherniavsky Durand [aut, cre] , Muhammad Saad Shamim [aut] , Aiden Lab [cph]

Documentation:   PDF Manual  

MIT + file LICENSE license

Imports Rcpp

Linking to Rcpp

System requirements: libcurl: libcurl-devel (rpm) or libcurl4-openssl-dev (deb)

See at CRAN