Hidden Markov Random Field for Spatial Transcriptomic Data

Discovery of spatial patterns with Hidden Markov Random Field. This package is designed for spatial transcriptomic data and single molecule fluorescent in situ hybridization (FISH) data such as sequential fluorescence in situ hybridization (seqFISH) and multiplexed error-robust fluorescence in situ hybridization (MERFISH). The methods implemented in this package are described in Zhu et al. (2018) .


Reference manual

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0.1 by Qian Zhu, a year ago


Report a bug at https://bitbucket.org/qzhudfci/smfishhmrf-r/issues

Browse source code at https://github.com/cran/smfishHmrf

Authors: Qian Zhu and Guo-Cheng Yuan

Documentation:   PDF Manual  

GPL license

Imports Rdpack

Depends on pracma, fs

See at CRAN