Hidden Markov Random Field for Spatial Transcriptomic Data

Discovery of spatial patterns with Hidden Markov Random Field. This package is designed for spatial transcriptomic data and single molecule fluorescent in situ hybridization (FISH) data such as sequential fluorescence in situ hybridization (seqFISH) and multiplexed error-robust fluorescence in situ hybridization (MERFISH). The methods implemented in this package are described in Zhu et al. (2018) .


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install.packages("smfishHmrf")

0.1 by Qian Zhu, a year ago


https://bitbucket.org/qzhudfci/smfishhmrf-r/src/master/


Report a bug at https://bitbucket.org/qzhudfci/smfishhmrf-r/issues


Browse source code at https://github.com/cran/smfishHmrf


Authors: Qian Zhu and Guo-Cheng Yuan


Documentation:   PDF Manual  


GPL license


Imports Rdpack

Depends on pracma, fs


See at CRAN