Single Cell Cluster-Based Annotation Toolkit for Cellular Heterogeneity

An automatic cluster-based annotation pipeline based on evidence-based score by matching the marker genes with known cell markers in tissue-specific cell taxonomy reference database for single-cell RNA-seq data. See Shao X, et al (2020) for more details.


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Reference manual

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install.packages("scCATCH")

3.0 by Xin Shao, 15 days ago


https://github.com/ZJUFanLab/scCATCH


Browse source code at https://github.com/cran/scCATCH


Authors: Xin Shao


Documentation:   PDF Manual  


GPL (>= 3) license


Imports Matrix, methods, progress, stats, crayon, reshape2

Suggests rmarkdown, knitr, testthat


See at CRAN