Somatic Copy Number Alteration Analysis Using Sequencing and SNP Array Data

Perform joint segmentation on two signal dimensions derived from total read depth (intensity) and allele specific read depth (intensity) for whole genome sequencing (WGS), whole exome sequencing (WES) and SNP array data.


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install.packages("saasCNV")

0.3.4 by Zhongyang Zhang, 3 years ago


https://zhangz05.u.hpc.mssm.edu/saasCNV/


Browse source code at https://github.com/cran/saasCNV


Authors: Zhongyang Zhang [aut, cre] , Ke Hao [aut] , Nancy R. Zhang [ctb]


Documentation:   PDF Manual  


GPL (>= 2) license


Depends on RANN, DNAcopy


See at CRAN