Somatic Copy Number Alteration Analysis Using Sequencing and SNP Array Data

Perform joint segmentation on two signal dimensions derived from total read depth (intensity) and allele specific read depth (intensity) for whole genome sequencing (WGS), whole exome sequencing (WES) and SNP array data.


Reference manual

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0.3.4 by Zhongyang Zhang, 4 years ago

Browse source code at

Authors: Zhongyang Zhang [aut, cre] , Ke Hao [aut] , Nancy R. Zhang [ctb]

Documentation:   PDF Manual  

GPL (>= 2) license

Depends on RANN, DNAcopy

See at CRAN