Ridge Regression and Other Kernels for Genomic Selection

Software for genomic prediction with the RR-BLUP mixed model (Endelman 2011, ). One application is to estimate marker effects by ridge regression; alternatively, BLUPs can be calculated based on an additive relationship matrix or a Gaussian kernel.


Reference manual

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install.packages("rrBLUP")

4.6.3 by Jeffrey Endelman, 3 years ago


< https://potatobreeding.cals.wisc.edu/software/>


Browse source code at https://github.com/cran/rrBLUP


Authors: Jeffrey Endelman


Documentation:   PDF Manual  


GPL-3 license


Imports stats, graphics, grDevices, parallel


Imported by BWGS, GROAN, Ghat, PopVar, RAINBOWR, factReg.

Suggested by GINAX, GSbench, MoBPS, dartR, dartR.base, dartR.captive, dartR.spatial, polyRAD.


See at CRAN