'PLINK' (and 'GCTA') File Helpers

Provide function that reads binary genotype produced by 'PLINK' < https://www.cog-genomics.org/plink/1.9/input#bed> into a R matrix, or scan the genotype one variant at a time like apply(), it also provides functions that reads and writes genotype relatedness/kinship matrices created by 'PLINK' < https://www.cog-genomics.org/plink/1.9/distance#make_rel> or 'GCTA' < https://cnsgenomics.com/software/gcta/#MakingaGRM>. Currently it does not support writing back into 'PLINK' binary, it is best used for bringing data produced by 'PLINK' and 'GCTA' into R environment.


News

Reference manual

It appears you don't have a PDF plugin for this browser. You can click here to download the reference manual.

install.packages("plinkFile")

0.1.0 by Xiaoran Tong, 2 years ago


Browse source code at https://github.com/cran/plinkFile


Authors: Xiaoran Tong [aut, cre]


Documentation:   PDF Manual  


GPL (>= 2) license



See at CRAN