Parameter Optimizing of ODE-Systems

Enable optimization of parameters of ordinary differential equations. Therefore, using 'SUNDIALS' to solve the ODE-System (see Hindmarsh, Alan C., Peter N. Brown, Keith E. Grant, Steven L. Lee, Radu Serban, Dan E. Shumaker, and Carol S. Woodward. (2005) ). Furthermore, for optimization the particle swarm algorithm is used (see: Akman, Devin, Olcay Akman, and Elsa Schaefer. (2018) and Sengupta, Saptarshi, Sanchita Basak, and Richard Peters. (2018) ). The ODE-System has to be passed as 'Rcpp'-function. The information for the parameter boundaries and states are conveyed using text-files.


Reference manual

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0.1 by Krämer Konrad, 4 months ago

Browse source code at

Authors: Krämer Konrad [aut, cre] , Krämer Johannes [aut] , Heyer Arnd [ths] , University of Stuttgart [uvp] , Institute of Biomaterials and Biomolecular Systems at the University of Stuttgart [his] | file AUTHORS

Documentation:   PDF Manual  

GPL-3 | file LICENSE license

Imports Rcpp

Suggests knitr, rmarkdown

Linking to Rcpp, RcppArmadillo

See at CRAN