Likelihood Based Optimal Partitioning and Indicator Species Analysis

Likelihood based optimal partitioning and indicator species analysis. Finding the best binary partition for each species based on model selection, with the possibility to take into account modifying/confounding variables as described in Kemencei et al. (2014) . The package implements binary and multi-level response models, various measures of uncertainty, Lorenz-curve based thresholding, with native support for parallel computations.


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0.1-2 by Peter Solymos, 4 years ago

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Authors: Peter Solymos [cre, aut] , Ermias T. Azeria [ctb]

Documentation:   PDF Manual  

GPL-2 license

Imports MASS, pscl, betareg, ResourceSelection, parallel, mefa4

Depends on pbapply

See at CRAN