Implementation of Marker-Assisted Mini-Pooling with Algorithm

To determine the number of quantitative assays needed for a sample of data using pooled testing methods, which include mini-pooling (MP), MP with algorithm (MPA), and marker-assisted MPA (mMPA). To estimate the number of assays needed, the package also provides a tool to conduct Monte Carlo (MC) to simulate different orders in which the sample would be collected to form pools. Using MC avoids the dependence of the estimated number of assays on any specific ordering of the samples to form pools.


Reference manual

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1.2.0 by Tao Liu, PhD, 3 years ago

Browse source code at

Authors: "Tao Liu , PhD <[email protected]> [aut, cre]" "Yizhen Xu , ScM <[email protected]> [aut]"

Documentation:   PDF Manual  

MIT + file LICENSE license

Suggests knitr, rmarkdown

See at CRAN