Package for Sequence Analysis by Local Score

Functionalities for calculating the local score and calculating statistical relevance (p-value) to find a local Score in a sequence of given distribution (S. Mercier and J.-J. Daudin (2001) <> ; S. Karlin and S. Altschul (1990) <> ; S. Mercier, D. Cellier and F. Charlot (2003) <> ; A. Lagnoux, S. Mercier and P. Valois (2017) ).


Reference manual

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1.0.6 by David Robelin, a year ago

Browse source code at

Authors: Sebastian Simon [aut] , David Robelin [aut, cre] , Sabine Mercier [aut] , Sebastien Dejean [aut] , The authors of Eigen the library for the included version of Eigen [cph]

Documentation:   PDF Manual  

GPL (>= 2) | file LICENSE license

Imports Rcpp, utils

Suggests knitr, rmarkdown, testthat

Linking to Rcpp

System requirements: C++11

See at CRAN