Package for Sequence Analysis by Local Score

Functionalities for calculating the local score and calculating statistical relevance (p-value) to find a local Score in a sequence of given distribution (S. Mercier and J.-J. Daudin (2001) < https://hal.archives-ouvertes.fr/hal-00714174> ; S. Karlin and S. Altschul (1990) < https://www.pnas.org/content/87/6/2264> ; S. Mercier, D. Cellier and F. Charlot (2003) < https://hal.archives-ouvertes.fr/hal-00937529v1> ; A. Lagnoux, S. Mercier and P. Valois (2017) ).


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Reference manual

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install.packages("localScore")

1.0.6 by David Robelin, 5 days ago


Browse source code at https://github.com/cran/localScore


Authors: Sebastian Simon [aut] , David Robelin [aut, cre] , Sabine Mercier [aut] , Sebastien Dejean [aut] , The authors of Eigen the library for the included version of Eigen [cph]


Documentation:   PDF Manual  


GPL (>= 2) | file LICENSE license


Imports Rcpp, utils

Suggests knitr, rmarkdown, testthat

Linking to Rcpp

System requirements: C++11


See at CRAN