K-Mers Similarity Score Matrix and HeatMap

Similarity Score Matrix and HeatMap for nucleic and amino acid k-mers. Similarity score is evaluated by Point Accepted Mutation (PAM) and BLOcks SUbstitution Matrix (BLOSUM). The 30, 40, 70, 120, 250 and 62, 45, 50, 62, 80, 100 matrix versions are available for PAM and BLOSUM, respectively. Alignment is evaluated by local and global alignment.


Reference manual

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install.packages("kmeRs")

2.1.0 by Rafal Urniaz, 2 years ago


https://github.com/urniaz/kmeRs


Report a bug at https://github.com/urniaz/kmeRs/issues


Browse source code at https://github.com/cran/kmeRs


Authors: Rafal Urniaz [aut, cre] , Jason Lin [ctb]


Documentation:   PDF Manual  


GPL-3 license


Imports utils, stats, Biostrings, BiocGenerics, pwalign

Suggests RColorBrewer, knitr, rmarkdown, unittest, testthat


See at CRAN