Integrative Analysis of RNA-Seq and ChIP-Seq Data

Integrative analysis of gene expression (RNA-Seq data), and histone modification data for user-defined sets of histone marks (ChIP-Seq data) to discover consistent changes in genes between biological conditions. Additionally, Pareto optimization is used to prioritize genes based on the level of consistent changes in both RNA-Seq and ChIP-Seq data.


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install.packages("intePareto")

0.0.1 by Yingying Cao, 11 days ago


Browse source code at https://github.com/cran/intePareto


Authors: Yingying Cao [aut, cre]


Documentation:   PDF Manual  


GPL (>= 2) license


Imports GenomicRanges, GenomeInfoDb, IRanges, GenomicAlignments, biomaRt, Rsamtools, rPref, DESeq2, apeglm

Suggests knitr, rmarkdown


See at CRAN