Mass Cytometry S4 Class Structure Pipeline for Images

Containerizes cytometry data and allows for S4 class structure to extend slots related to cell morphology, spatial coordinates, phenotype network information, and unique cellular labeling.


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install.packages("imcExperiment")

0.99.0 by Anthony Colombo, a month ago


Browse source code at https://github.com/cran/imcExperiment


Authors: Anthony Colombo [aut, cre]


Documentation:   PDF Manual  


MIT + file LICENSE license


Imports SummarizedExperiment, S4Vectors, spatstat.geom, stats

Depends on SingleCellExperiment, methods

Suggests knitr, rmarkdown


See at CRAN