Mass Cytometry S4 Class Structure Pipeline for Images

Containerizes cytometry data and allows for S4 class structure to extend slots related to cell morphology, spatial coordinates, phenotype network information, and unique cellular labeling.


Reference manual

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0.99.0 by Anthony Colombo, 5 months ago

Browse source code at

Authors: Anthony Colombo [aut, cre]

Documentation:   PDF Manual  

MIT + file LICENSE license

Imports SummarizedExperiment, S4Vectors, spatstat.geom, stats

Depends on SingleCellExperiment, methods

Suggests knitr, rmarkdown

See at CRAN